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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
TCP5 protein (Solanum lycopersicum) - STRING interaction network
"TCP5" - TCP transcription factor 5 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCP5TCP transcription factor 5 (284 aa)    
Predicted Functional Partners:
TCP16
TCP transcription factor 16 (409 aa)
       
 
  0.848
Solyc11g062010.1.1
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (2667 aa)
       
 
  0.814
matriochka
Mini zinc finger protein (90 aa)
           
  0.730
LOG8
Cytokinin riboside 5’-monophosphate phosphoribohydrolase; Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (191 aa)
           
  0.715
LOG7
Cytokinin riboside 5’-monophosphate phosphoribohydrolase; Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (217 aa)
           
  0.711
101254347
annotation not available (543 aa)
       
      0.613
Solyc04g016010.2.1
annotation not available (537 aa)
       
      0.613
TCP11
Uncharacterized protein; TCP transcription factor 11 (445 aa)
       
 
  0.573
101267682
Homeodomain-like superfamily protein (439 aa)
       
 
  0.533
101263960
Uncharacterized protein; Chloroplast signal recognition particle component (CAO) (368 aa)
     
      0.514
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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