STRINGSTRING
PDH protein (Solanum lycopersicum) - STRING interaction network
"PDH" - Proline dehydrogenase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDHProline dehydrogenase (496 aa)    
Predicted Functional Partners:
Solyc06g071000.2.1
Uncharacterized protein (554 aa)
     
  0.965
Solyc02g068640.2.1
Uncharacterized protein (276 aa)
     
  0.922
Solyc11g044310.1.1
Proline iminopeptidase (396 aa)
       
  0.903
Solyc11g005200.1.1
Uncharacterized protein (286 aa)
         
    0.900
Solyc06g054490.2.1
Uncharacterized protein (295 aa)
         
    0.900
Solyc04g081930.2.1
Uncharacterized protein (273 aa)
         
    0.900
Solyc03g033320.2.1
Uncharacterized protein (272 aa)
         
    0.900
Solyc03g025500.2.1
Uncharacterized protein (306 aa)
         
    0.900
Solyc02g092710.2.1
Uncharacterized protein (290 aa)
         
    0.900
Solyc02g087490.1.1
Uncharacterized protein (325 aa)
         
    0.900
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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