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Solyc02g089970.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g089970.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g089970.2.1Uncharacterized protein; Nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (1509 aa)    
Predicted Functional Partners:
FIE
Fertilization-independent endosperm protein (372 aa)
       
 
  0.935
101265334
Protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (1080 aa)
     
 
  0.924
Solyc10g024470.1.1
annotation not available (490 aa)
       
 
  0.881
LHP1
Chromo domain protein LHP1; Structural component of heterochromatin involved in gene repression. Recognizes and binds histone H3 tails methylated at ’Lys-9’, leading to epigenetic repression (399 aa)
       
 
  0.881
Solyc04g028560.2.1
annotation not available (777 aa)
     
 
  0.861
101257458
Uncharacterized protein; Relative of early flowering 6 (1252 aa)
     
 
  0.861
101251648
annotation not available (430 aa)
   
 
  0.842
101254943
Histone deacetylase 1; Belongs to the histone deacetylase family. HD Type 1 subfamily (498 aa)
   
 
  0.842
101258377
annotation not available (471 aa)
   
 
  0.842
101256864
annotation not available (449 aa)
   
 
  0.842
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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