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Solyc02g090750.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g090750.2.1" - BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g090750.2.1BEST Arabidopsis thaliana protein match is- eukaryotic initiation factor 4A-III (TAIR-AT3G19760.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other /.../yotes - 2996 (source- NCBI BLink) (203 aa)    
Predicted Functional Partners:
Y14
RNA-binding protein 8A; RNA-binding (RRM/RBD/RNP motifs) family protein (195 aa)
     
 
  0.985
101263464
annotation not available (521 aa)
     
 
  0.981
101268456
Mago nashi family protein (151 aa)
     
 
  0.975
Solyc08g061000.2.1
annotation not available (485 aa)
     
 
  0.972
Solyc06g066060.2.1
annotation not available (410 aa)
     
 
  0.972
101260428
Uncharacterized protein; Sas10/Utp3/C1D family (313 aa)
     
 
  0.967
Solyc05g049950.2.1
annotation not available (281 aa)
     
      0.963
Solyc01g094540.2.1
annotation not available (280 aa)
     
      0.963
101249838
DEA(D/H)-box RNA helicase family protein (754 aa)
     
   
  0.957
cdc5
CDC5-like protein (987 aa)
     
 
  0.951
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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