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STRINGSTRING
Solyc02g091010.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g091010.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g091010.1.1annotation not available (134 aa)    
Predicted Functional Partners:
101253565
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- nucleolus; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species- Ar /.../ 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source- NCBI BLink) (388 aa)
     
 
  0.930
101246938
Uncharacterized protein; Nucleoporin 155 (1481 aa)
     
 
  0.925
Solyc12g049410.1.1
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 5399 /.../ hits to 5001 proteins in 612 species- Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source- NCBI BLink) (1016 aa)
     
 
  0.925
101262406
annotation not available (862 aa)
     
 
  0.920
101264859
Uncharacterized protein; Structural constituent of nuclear pore (758 aa)
     
 
  0.909
101247869
annotation not available (350 aa)
     
 
  0.909
101253512
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro-IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Ot /.../karyotes - 2996 (source- NCBI BLink) (719 aa)
     
 
  0.865
GATC
Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln); Belongs to the GatC family (140 aa)
     
 
  0.865
101257847
annotation not available (301 aa)
     
 
  0.860
101265789
annotation not available (302 aa)
     
 
  0.860
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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