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Solyc02g091120.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g091120.2.1" - DNA ligase in Solanum lycopersicum
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g091120.2.1DNA ligase (1473 aa)    
Predicted Functional Partners:
pcna
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
   
  0.995
Solyc07g005020.2.1
DNA helicase (737 aa)
     
   
  0.985
Solyc09g009340.1.1
Uncharacterized protein (731 aa)
     
  0.984
Solyc01g091430.1.1
Uncharacterized protein (126 aa)
     
  0.982
Solyc01g091350.2.1
ATP-dependent DNA helicase 2 subunit KU80 ; Single-stranded DNA-dependent ATP-dependent helicase (709 aa)
     
  0.982
Solyc03g025900.2.1
Uncharacterized protein (600 aa)
     
  0.978
Solyc01g102370.2.1
Uncharacterized protein ; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts [...] (382 aa)
     
  0.978
Solyc01g091820.2.1
Uncharacterized protein (603 aa)
     
  0.978
Solyc07g005880.2.1
Uncharacterized protein (1012 aa)
     
  0.960
Solyc06g071490.1.1
Uncharacterized protein (1135 aa)
     
  0.954
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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