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STRINGSTRING
SlmCLV1 protein (Solanum lycopersicum) - STRING interaction network
"SlmCLV1" - Leucine rich repeat receptor protein kinase CLAVATA1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SlmCLV1Leucine rich repeat receptor protein kinase CLAVATA1 (1016 aa)    
Predicted Functional Partners:
101266413
Leucine-rich receptor-like protein kinase family protein (986 aa)
   
 
0.711
101268564
annotation not available (744 aa)
       
 
0.691
SlmRPK2
Leucine rich repeat receptor protein kinase 2 (1125 aa)
       
 
0.678
LOC544162
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin. Plays an important role in resistance to stresses, seed development and dormancy (669 aa)
       
 
  0.501
101257128
annotation not available (609 aa)
     
   
  0.500
BAC19.14
BAC19.14 ; Belongs to the GRAS family (536 aa)
           
  0.495
Solyc05g013360.2.1
Uncharacterized protein; Poor homologous synapsis 1 (304 aa)
           
  0.465
101249027
SPA (suppressor of phyA-105) protein family (1019 aa)
           
  0.463
Solyc03g119800.1.1
annotation not available (340 aa)
           
  0.463
Solyc02g077360.1.1
Integrase-type DNA-binding superfamily protein (258 aa)
           
  0.463
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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