STRINGSTRING
Solyc02g094150.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g094150.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g094150.2.1Uncharacterized protein (310 aa)    
Predicted Functional Partners:
Solyc10g005880.2.1
Uridine kinase (422 aa)
   
   
  0.631
Solyc07g065890.2.1
Uridine kinase (446 aa)
   
   
  0.631
Solyc06g065580.2.1
Uridine kinase (483 aa)
   
   
  0.631
Solyc02g067880.1.1
Uridine kinase (445 aa)
   
   
  0.631
Solyc05g050940.2.1
Uncharacterized protein (453 aa)
   
 
  0.625
Solyc02g081910.1.1
DNA topoisomerase ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1175 aa)
         
  0.620
Solyc02g068750.1.1
Uncharacterized protein (346 aa)
   
 
  0.619
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
   
   
  0.575
Solyc00g042140.1.1
Annotation not available (399 aa)
         
  0.534
Solyc11g006340.1.1
Uncharacterized protein (632 aa)
              0.521
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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