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101256820 protein (Solanum lycopersicum) - STRING interaction network
"101256820" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101256820Uncharacterized protein; DEAD/DEAH box helicase, putative (826 aa)    
Predicted Functional Partners:
101253879
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (552 aa)
     
 
  0.989
Solyc01g090470.2.1
rRNA processing protein-related (389 aa)
     
 
  0.985
101246880
Uncharacterized protein; Embryo sac development arrest 7 (701 aa)
     
 
  0.982
101252639
Uncharacterized protein; CCAAT-binding factor (608 aa)
     
 
  0.978
101260390
CONTAINS InterPro DOMAIN/s- Nrap protein (InterPro-IPR005554); Has 396 Blast hits to 382 proteins in 182 species- Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source- NCBI BLink) (1051 aa)
     
 
  0.976
101268053
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cytosol, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- NUC153 (InterPro-IPR012580); Has 3663 /.../t hits to 21323 proteins in 1057 species- Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source- NCBI BLink) (768 aa)
     
      0.964
Solyc03g051900.2.1
Uncharacterized protein; RNA binding;RNA binding (1979 aa)
     
 
  0.962
Solyc10g084740.1.1
annotation not available (440 aa)
     
 
  0.957
Solyc08g008040.2.1
annotation not available (203 aa)
     
 
  0.957
101251902
Nucleotide binding;protein binding (452 aa)
     
 
  0.957
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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