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STRINGSTRING
Solyc03g007920.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g007920.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g007920.2.1annotation not available (289 aa)    
Predicted Functional Partners:
CNOT1
Uncharacterized protein; Transcription regulators (2411 aa)
     
 
  0.888
101266237
Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein (857 aa)
     
 
  0.886
101249013
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Nucleic acid-binding, OB-fold-like (InterPro-IPR016027), Protein of unknown function DUF171 (InterPro-IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species- Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - /.../lants - 227; Viruses - 4; Other Eukaryotes - 1703 (source- NCBI BLink) (360 aa)
           
  0.764
101245924
Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein (848 aa)
     
 
  0.745
101244969
Protein kinase superfamily protein; Belongs to the protein kinase superfamily (402 aa)
           
  0.691
Solyc02g093500.2.1
Uncharacterized protein; GDSL-like Lipase/Acylhydrolase superfamily protein (378 aa)
           
  0.684
101243758
annotation not available (414 aa)
           
  0.581
101253673
Tubby like protein 8; Belongs to the TUB family (406 aa)
           
  0.571
Solyc05g010480.2.1
Transducin family protein / WD-40 repeat family protein (396 aa)
           
  0.570
Solyc10g038170.1.1
alpha/beta-Hydrolases superfamily protein (376 aa)
           
  0.569
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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