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STRINGSTRING
Solyc03g025280.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g025280.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g025280.2.1annotation not available (947 aa)    
Predicted Functional Partners:
cdc5
CDC5-like protein (987 aa)
     
 
  0.987
101255621
Hydroxyproline-rich glycoprotein family protein (345 aa)
     
 
  0.939
Solyc05g005620.2.1
Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (958 aa)
     
   
  0.886
101250296
pre-mRNA-processing protein 40C (1040 aa)
     
        0.881
101248051
annotation not available (430 aa)
     
      0.869
101263271
D111/G-patch domain-containing protein (393 aa)
     
      0.869
Solyc06g073780.2.1
Structural maintenance of chromosomes protein; SMC3 (1229 aa)
     
   
  0.866
101248146
Protein-protein interaction regulator family protein (414 aa)
     
        0.865
101255831
Uncharacterized protein; Structural maintenance of chromosomes 5 (1050 aa)
     
        0.852
101254580
annotation not available (1147 aa)
     
 
  0.813
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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