STRINGSTRING
Solyc03g025890.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g025890.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g025890.1.1Uncharacterized protein ; Component of the post-replicative DNA mismatch repair system (MMR) (1117 aa)    
Predicted Functional Partners:
Solyc09g074980.2.1
Uncharacterized protein (796 aa)
 
  0.976
MLH1
MLH1 (728 aa)
 
  0.973
Solyc09g074990.2.1
Uncharacterized protein (142 aa)
   
  0.953
Solyc02g082660.2.1
Uncharacterized protein (1211 aa)
   
  0.937
pcna
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.934
MSH2
Mismatch repair protein ; Component of the post-replicative DNA mismatch repair system (MMR) (943 aa)
   
0.800
Solyc03g119070.2.1
Uncharacterized protein (544 aa)
   
  0.793
Solyc02g071530.1.1
Uncharacterized protein (742 aa)
   
  0.793
Solyc07g005880.2.1
Uncharacterized protein (1012 aa)
   
 
  0.776
Solyc10g049480.1.1
Uncharacterized protein (461 aa)
   
  0.768
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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