STRINGSTRING
Solyc03g033540.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g033540.2.1" - Calcium-dependent protein kinase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g033540.2.1Calcium-dependent protein kinase (565 aa)    
Predicted Functional Partners:
Solyc04g006930.2.1
Uncharacterized protein (800 aa)
     
0.827
Solyc07g042460.1.1
Uncharacterized protein (881 aa)
         
    0.800
LOC543942
Regulator of gene silencing (198 aa)
     
  0.764
Solyc11g071750.1.1
Uncharacterized protein (116 aa)
     
  0.764
Solyc11g071740.1.1
Uncharacterized protein (201 aa)
     
  0.764
Solyc06g073830.1.1
Uncharacterized protein (184 aa)
     
  0.764
Solyc03g005040.1.1
Uncharacterized protein (141 aa)
     
  0.764
Solyc02g088090.1.1
Uncharacterized protein (181 aa)
     
  0.763
Solyc02g067220.2.1
Uncharacterized protein (140 aa)
     
  0.763
Solyc02g091480.1.1
Uncharacterized protein (84 aa)
     
  0.759
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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