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STRINGSTRING
101251858 protein (Solanum lycopersicum) - STRING interaction network
"101251858" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101251858annotation not available (281 aa)    
Predicted Functional Partners:
101251393
Uncharacterized protein; INVOLVED IN- autophagy; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 17 (InterPro-IPR007240), Autophagy-related protein 11 (InterPro-IPR019460); Has 8793 Blast hits to 6 /.../oteins in 570 species- Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source- NCBI BLink) (1155 aa)
       
 
  0.933
Solyc04g049870.1.1
annotation not available (204 aa)
 
 
  0.892
Solyc11g063630.1.1
annotation not available (272 aa)
 
 
  0.889
Solyc11g021210.1.1
Uncharacterized protein; YCF5 (290 aa)
   
 
  0.854
ccsA
Cytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment (232 aa)
   
 
  0.854
Solyc04g008630.2.1
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle (899 aa)
           
  0.846
Solyc00g049210.1.1
annotation not available (589 aa)
   
 
  0.843
101265523
Cytochrome c biogenesis protein family (158 aa)
 
 
  0.817
Solyc03g111740.2.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (482 aa)
           
  0.763
101246793
ThiF family protein (715 aa)
           
  0.761
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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