STRINGSTRING
LAT59 protein (Solanum lycopersicum) - STRING interaction network
"LAT59" - Probable pectate lyase P59 in Solanum lycopersicum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAT59Probable pectate lyase P59 ; Might be needed during pollen development and tube growth (449 aa)    
Predicted Functional Partners:
LAT52
Anther-specific protein LAT52 ; May play a role during germination or early tube growth (161 aa)
     
   
  0.930
PS-2
Dehiscence polygalacturonase (392 aa)
   
 
  0.930
Solyc01g079180.2.1
Pectinesterase (387 aa)
   
 
  0.921
Solyc06g084620.1.1
Pectinesterase (564 aa)
   
 
  0.920
Solyc05g052120.2.1
Pectinesterase (342 aa)
   
 
  0.919
Solyc05g052110.2.1
Pectinesterase (368 aa)
   
 
  0.919
Solyc05g054360.2.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (627 aa)
   
 
  0.919
Solyc01g099940.2.1
Pectinesterase (456 aa)
   
 
  0.919
Solyc01g066360.2.1
Pectinesterase (548 aa)
   
 
  0.919
Solyc07g017560.2.1
Pectinesterase (652 aa)
   
 
  0.919
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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