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STRINGSTRING
LAT59 protein (Solanum lycopersicum) - STRING interaction network
"LAT59" - Probable pectate lyase P59 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAT59Probable pectate lyase P59; Might be needed during pollen development and tube growth (449 aa)    
Predicted Functional Partners:
101264184
Uncharacterized protein; Calcium/lipid-binding (CaLB) phosphatase (413 aa)
     
   
  0.808
LAT52
Anther-specific protein LAT52; May play a role during germination or early tube growth (161 aa)
           
  0.801
101247960
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (524 aa)
 
   
  0.785
Solyc01g099940.2.1
annotation not available (456 aa)
 
 
  0.759
101244375
annotation not available (368 aa)
 
 
  0.759
Solyc05g052120.2.1
annotation not available (342 aa)
 
 
  0.758
101264501
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (559 aa)
 
 
  0.755
Solyc05g054360.2.1
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (627 aa)
 
 
  0.755
101260471
annotation not available (552 aa)
 
 
  0.755
101261266
annotation not available (548 aa)
 
 
  0.754
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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