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STRINGSTRING
Solyc03g071640.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g071640.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g071640.1.1annotation not available (128 aa)    
Predicted Functional Partners:
101266099
annotation not available (607 aa)
     
 
  0.901
Solyc09g090420.2.1
annotation not available (1105 aa)
     
 
  0.901
101251944
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA (558 aa)
     
 
  0.901
101268341
annotation not available (154 aa)
     
 
  0.901
101263485
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA (560 aa)
     
 
  0.901
Solyc05g005620.2.1
Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (958 aa)
     
 
  0.883
101250296
pre-mRNA-processing protein 40C (1040 aa)
     
 
  0.879
101263464
annotation not available (521 aa)
     
      0.867
cdc5
CDC5-like protein (987 aa)
     
      0.861
101256810
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (355 aa)
     
 
  0.777
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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