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Solyc03g078020.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g078020.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g078020.2.1Uncharacterized protein; Peptide chain release factor 1 (283 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
annotation not available (285 aa)
 
 
  0.911
rps16
30S ribosomal protein S16 (132 aa)
 
 
  0.905
Solyc04g049260.1.1
annotation not available (166 aa)
   
 
  0.893
Solyc00g026870.1.1
annotation not available (465 aa)
 
 
  0.849
101245942
Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family (129 aa)
   
 
  0.836
101256335
Ribosomal protein S5 domain 2-like superfamily protein; Belongs to the universal ribosomal protein uS9 family (385 aa)
 
      0.827
101252000
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (155 aa)
   
 
  0.826
Solyc12g100070.1.1
Uncharacterized protein; S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (196 aa)
   
 
  0.816
101262538
RNA methyltransferase family protein (367 aa)
   
 
  0.816
Solyc04g079790.2.1
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (237 aa)
 
      0.808
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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