• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc03g078090.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g078090.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g078090.2.1annotation not available (498 aa)    
Predicted Functional Partners:
101249127
SNARE-like superfamily protein (141 aa)
     
   
  0.569
101246713
annotation not available (508 aa)
   
     
  0.519
101247546
annotation not available (483 aa)
   
     
  0.445
Solyc01g094970.2.1
annotation not available (407 aa)
   
     
  0.445
101255793
annotation not available (486 aa)
   
     
  0.444
101263946
annotation not available (425 aa)
   
     
  0.421
PG2
Polygalacturonase-2; Catalytic subunit of the polygalacturonase isozyme 1 and 2 (PG1 and PG2). Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation. The depolymerization and solubilization of cell wall polyuronides mediated by PG2 during ripening seems to be limited by the beta subunit GP1, probably by recruiting PG2 to form PG1 (457 aa)
   
     
  0.410
PS-2
Dehiscence polygalacturonase (392 aa)
   
     
  0.407
LAT56
Probable pectate lyase P56; Might be needed during pollen development and tube growth (398 aa)
 
     
  0.404
101254166
annotation not available (187 aa)
           
  0.400
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (15%) [HD]