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STRINGSTRING
Solyc03g093250.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g093250.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g093250.1.1annotation not available (647 aa)    
Predicted Functional Partners:
101260195
ARM repeat superfamily protein (1038 aa)
     
 
  0.995
101261635
Uncharacterized protein; LOCATED IN- chloroplast; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 9 growth stages; CONTAINS InterPro DOMAIN/s- Barren (InterPro-IPR008418); Has 467 Blast hits to 447 proteins in 202 species- Archae - 0; Bacteria - 4; Metazoa - 147; Fungi /.../; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source- NCBI BLink) (648 aa)
     
 
  0.995
Solyc10g079730.1.1
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (1400 aa)
     
 
  0.995
101264194
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Non-SMC condensin II complex, subunit H2-like (InterPro-IPR009378); Has 249 Blast hits to 211 proteins in 82 species- Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (so /.../NCBI BLink) (678 aa)
     
 
  0.993
Solyc02g067300.2.1
annotation not available (53 aa)
     
 
  0.991
Solyc02g067290.2.1
annotation not available (92 aa)
     
 
  0.991
101244926
Structural maintenance of chromosome 3 (1246 aa)
   
 
0.987
101258564
annotation not available (532 aa)
   
 
  0.986
Solyc12g099510.1.1
Uncharacterized protein; Binding (1764 aa)
     
 
  0.984
100134876
Structural maintenance of chromosomes protein; SMC1 (1218 aa)
   
 
0.978
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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