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Solyc03g093350.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g093350.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g093350.2.1Uncharacterized protein; Splicing factor-related (723 aa)    
Predicted Functional Partners:
cdc5
CDC5-like protein (987 aa)
     
 
  0.917
101258325
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (570 aa)
     
 
  0.916
Solyc09g090420.2.1
annotation not available (1105 aa)
     
 
  0.915
101251944
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA (558 aa)
     
 
  0.915
101268341
annotation not available (154 aa)
     
 
  0.915
101263485
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA (560 aa)
     
 
  0.915
101260632
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (436 aa)
     
 
  0.914
101263464
annotation not available (521 aa)
     
 
  0.890
101255621
Hydroxyproline-rich glycoprotein family protein (345 aa)
     
 
  0.887
Solyc03g033950.2.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cytosol, nucleus; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown f /.../n DUF2050, pre-mRNA-splicing factor (InterPro-IPR018609); Has 13303 Blast hits to 9618 proteins in 489 species- Archae - 8; Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other Eukaryotes - 2334 (source- NCBI BLink) (487 aa)
       
 
  0.879
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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