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STRINGSTRING
Solyc03g093700.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g093700.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g093700.1.1annotation not available (839 aa)    
Predicted Functional Partners:
101244931
Uncharacterized protein; S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (315 aa)
         
  0.687
Solyc10g024470.1.1
annotation not available (490 aa)
       
 
  0.590
LHP1
Chromo domain protein LHP1; Structural component of heterochromatin involved in gene repression. Recognizes and binds histone H3 tails methylated at ’Lys-9’, leading to epigenetic repression (399 aa)
       
 
  0.590
FIE
Fertilization-independent endosperm protein (372 aa)
       
 
  0.584
101264796
ARM repeat superfamily protein (1222 aa)
     
        0.558
101249316
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (314 aa)
     
 
  0.536
Solyc11g065370.1.1
Uncharacterized protein; TRAUCO (446 aa)
     
 
  0.530
Solyc04g028560.2.1
annotation not available (777 aa)
     
 
  0.508
101257458
Uncharacterized protein; Relative of early flowering 6 (1252 aa)
     
 
  0.508
Solyc07g052340.2.1
Uncharacterized protein; Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (884 aa)
     
 
  0.498
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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