CNGC15 protein (Solanum lycopersicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

CNGC15

annotation not available (726 aa)

Predicted Functional Partners:

101251575

0.811

GPAT

0.766

N6

0.701

101264408

0.601

101266623

0.601

Solyc04g009640.2.1

0.601

Solyc03g006080.2.1

0.601

Solyc02g072480.2.1

0.601

104645862

0.601

101246110

0.601

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
101246110	CNGC15	Solyc02g068820.1.1	Solyc03g098210.2.1	annotation not available	annotation not available	0.601
101251575	CNGC15	Solyc04g049910.2.1	Solyc03g098210.2.1	Uncharacterized protein; Nuclear factor Y, subunit B1	annotation not available	0.811
101264408	CNGC15	Solyc12g008400.1.1	Solyc03g098210.2.1	annotation not available	annotation not available	0.601
101266623	CNGC15	Solyc04g015980.2.1	Solyc03g098210.2.1	annotation not available	annotation not available	0.601
104645862	CNGC15	Solyc02g072400.1.1	Solyc03g098210.2.1	annotation not available	annotation not available	0.601
CNGC15	101246110	Solyc03g098210.2.1	Solyc02g068820.1.1	annotation not available	annotation not available	0.601
CNGC15	101251575	Solyc03g098210.2.1	Solyc04g049910.2.1	annotation not available	Uncharacterized protein; Nuclear factor Y, subunit B1	0.811
CNGC15	101264408	Solyc03g098210.2.1	Solyc12g008400.1.1	annotation not available	annotation not available	0.601
CNGC15	101266623	Solyc03g098210.2.1	Solyc04g015980.2.1	annotation not available	annotation not available	0.601
CNGC15	104645862	Solyc03g098210.2.1	Solyc02g072400.1.1	annotation not available	annotation not available	0.601
CNGC15	GPAT	Solyc03g098210.2.1	Solyc08g076470.2.1	annotation not available	Glycerol-3-phosphate acyltransferase, chloroplastic; Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids; Belongs to the GPAT/DAPAT family	0.766
CNGC15	N6	Solyc03g098210.2.1	Solyc10g081170.1.1	annotation not available	Uncharacterized protein; Calmodulin	0.701
CNGC15	Solyc02g072480.2.1	Solyc03g098210.2.1	Solyc02g072480.2.1	annotation not available	annotation not available	0.601
CNGC15	Solyc03g006080.2.1	Solyc03g098210.2.1	Solyc03g006080.2.1	annotation not available	annotation not available	0.601
CNGC15	Solyc04g009640.2.1	Solyc03g098210.2.1	Solyc04g009640.2.1	annotation not available	annotation not available	0.601
GPAT	CNGC15	Solyc08g076470.2.1	Solyc03g098210.2.1	Glycerol-3-phosphate acyltransferase, chloroplastic; Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids; Belongs to the GPAT/DAPAT family	annotation not available	0.766
N6	CNGC15	Solyc10g081170.1.1	Solyc03g098210.2.1	Uncharacterized protein; Calmodulin	annotation not available	0.701
Solyc02g072480.2.1	CNGC15	Solyc02g072480.2.1	Solyc03g098210.2.1	annotation not available	annotation not available	0.601
Solyc03g006080.2.1	CNGC15	Solyc03g006080.2.1	Solyc03g098210.2.1	annotation not available	annotation not available	0.601
Solyc04g009640.2.1	CNGC15	Solyc04g009640.2.1	Solyc03g098210.2.1	annotation not available	annotation not available	0.601

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