Solyc03g111000.2.1 protein (Solanum lycopersicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Solyc03g111000.2.1

Uncharacterized protein (174 aa)

Predicted Functional Partners:

Solyc09g008130.2.1

0.999

Solyc07g066610.2.1

0.998

Solyc07g066600.2.1

0.998

Solyc10g054870.1.1

0.996

Solyc06g005490.2.1

0.996

Solyc04g011510.2.1

0.996

Solyc01g111120.2.1

0.996

Solyc10g018300.1.1

0.981

Solyc05g050970.2.1

0.981

Solyc01g018020.1.1

0.981

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc01g018020.1.1	Solyc01g111120.2.1	Uncharacterized protein	Uncharacterized protein	0.951
Solyc01g018020.1.1	Solyc03g111000.2.1	Uncharacterized protein	Uncharacterized protein	0.981
Solyc01g018020.1.1	Solyc04g011510.2.1	Uncharacterized protein	Uncharacterized protein	0.951
Solyc01g018020.1.1	Solyc05g050970.2.1	Uncharacterized protein	Uncharacterized protein	0.902
Solyc01g018020.1.1	Solyc06g005490.2.1	Uncharacterized protein	Uncharacterized protein	0.951
Solyc01g018020.1.1	Solyc07g066600.2.1	Uncharacterized protein	Phosphoglycerate kinase	0.705
Solyc01g018020.1.1	Solyc07g066610.2.1	Uncharacterized protein	Phosphoglycerate kinase	0.705
Solyc01g018020.1.1	Solyc09g008130.2.1	Uncharacterized protein	Phosphoglycerate kinase	0.767
Solyc01g018020.1.1	Solyc10g018300.1.1	Uncharacterized protein	Uncharacterized protein	0.902
Solyc01g018020.1.1	Solyc10g054870.1.1	Uncharacterized protein	Uncharacterized protein	0.951
Solyc01g111120.2.1	Solyc01g018020.1.1	Uncharacterized protein	Uncharacterized protein	0.951
Solyc01g111120.2.1	Solyc03g111000.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc01g111120.2.1	Solyc05g050970.2.1	Uncharacterized protein	Uncharacterized protein	0.951
Solyc01g111120.2.1	Solyc07g066600.2.1	Uncharacterized protein	Phosphoglycerate kinase	0.999
Solyc01g111120.2.1	Solyc07g066610.2.1	Uncharacterized protein	Phosphoglycerate kinase	0.999
Solyc01g111120.2.1	Solyc09g008130.2.1	Uncharacterized protein	Phosphoglycerate kinase	0.998
Solyc01g111120.2.1	Solyc10g018300.1.1	Uncharacterized protein	Uncharacterized protein	0.951
Solyc03g111000.2.1	Solyc01g018020.1.1	Uncharacterized protein	Uncharacterized protein	0.981
Solyc03g111000.2.1	Solyc01g111120.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc03g111000.2.1	Solyc04g011510.2.1	Uncharacterized protein	Uncharacterized protein	0.996

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