STRINGSTRING
Solyc03g111340.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g111340.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g111340.2.1Uncharacterized protein (426 aa)    
Predicted Functional Partners:
Solyc06g034160.2.1
Autophagy-related protein 3 (313 aa)
     
  0.935
Solyc12g089030.1.1
Uncharacterized protein (183 aa)
       
  0.823
Solyc10g039370.1.1
Uncharacterized protein (80 aa)
       
  0.823
Solyc06g007500.1.1
Uncharacterized protein (262 aa)
       
  0.823
RCE1
RUB1 conjugating enzyme (183 aa)
       
  0.823
Solyc02g085690.2.1
Uncharacterized protein (226 aa)
       
  0.823
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
       
  0.791
Solyc01g009050.2.1
Uncharacterized protein (670 aa)
   
   
  0.790
Solyc01g103950.2.1
Uncharacterized protein (553 aa)
   
   
  0.788
Solyc10g006270.2.1
Autophagy-related protein (147 aa)
       
  0.761
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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