• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc03g111560.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g111560.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g111560.2.1annotation not available (819 aa)    
Predicted Functional Partners:
Solyc12g089150.1.1
Uncharacterized protein; Syntaxin of plants 61 (129 aa)
           
  0.699
Solyc04g078130.2.1
annotation not available (338 aa)
           
  0.598
Solyc05g012940.2.1
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- nucleus; CONTAINS InterPro DOMAIN/s- Ribonuclease H2, subunit B (InterPro-IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; /.../ia - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (334 aa)
     
   
  0.507
Solyc05g055610.2.1
Met-10+ like family protein / kelch repeat-containing protein (994 aa)
     
 
  0.451
101262362
Thioredoxin superfamily protein (180 aa)
           
  0.426
101260272
annotation not available (199 aa)
           
  0.422
pi1
Wound-induced protein (212 aa)
           
  0.422
Solyc03g093260.2.1
annotation not available (552 aa)
     
        0.420
Solyc03g093250.1.1
annotation not available (647 aa)
     
        0.420
101256158
Zinc finger (CCCH-type) family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family (921 aa)
           
  0.408
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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