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DXR protein (Solanum lycopersicum) - STRING interaction network
"DXR" - 1-deoxy-D-xylulose-5-phosphate reductoisomerase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DXR1-deoxy-D-xylulose-5-phosphate reductoisomerase (475 aa)    
Predicted Functional Partners:
dxs
1-D-deoxyxylulose 5-phosphate synthase (719 aa)
 
 
  0.994
Solyc01g102820.2.1
Uncharacterized protein (307 aa)
 
  0.990
Solyc11g010850.1.1
1-deoxy-D-xylulose 5-phosphate synthase 2 (714 aa)
 
 
  0.982
Solyc08g066950.2.1
Uncharacterized protein (709 aa)
 
 
  0.978
LOC543704
GcpE (740 aa)
 
   
  0.974
Solyc08g081570.2.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (256 aa)
 
  0.935
ISPE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic ; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol (400 aa)
   
   
  0.841
Solyc01g109300.2.1
ISPH protein (461 aa)
 
   
  0.824
HMGS
3-hydroxy-3-methylglutaryl coenzyme A synthase (462 aa)
           
  0.657
zds
Zeta-carotene desaturase, chloroplastic/chromoplastic ; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (588 aa)
     
   
  0.590
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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