STRINGSTRING
Solyc03g114410.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g114410.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g114410.2.1Uncharacterized protein (984 aa)    
Predicted Functional Partners:
Solyc11g005550.1.1
Uncharacterized protein (299 aa)
       
 
  0.932
Solyc11g067010.1.1
Uncharacterized protein (117 aa)
       
      0.931
Solyc09g009300.2.1
Uncharacterized protein (197 aa)
       
      0.931
Solyc09g090660.2.1
Uncharacterized protein (521 aa)
     
 
  0.925
Solyc02g078970.2.1
Uncharacterized protein (570 aa)
     
      0.922
Solyc03g093880.2.1
U6 snRNA phosphodiesterase ; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (287 aa)
       
      0.720
Solyc01g008260.2.1
Uncharacterized protein (164 aa)
       
      0.720
Solyc01g028930.2.1
Uncharacterized protein (203 aa)
     
 
  0.618
Solyc01g009290.2.1
Protein CLP1 homolog ; Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3’-end formation (439 aa)
       
      0.597
Solyc12g035280.1.1
Uncharacterized protein (371 aa)
     
      0.512
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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