STRINGSTRING
Solyc03g115000.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g115000.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g115000.2.1Uncharacterized protein (1092 aa)    
Predicted Functional Partners:
Solyc05g006200.2.1
tRNA methyltransferase 5 homolog ; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (491 aa)
           
  0.489
Solyc02g086640.2.1
Uncharacterized protein (312 aa)
           
  0.489
Solyc11g012760.1.1
Uncharacterized protein (328 aa)
           
  0.489
Solyc09g014320.2.1
2’-O-ribose RNA methyltransferase TRM7 homolog ; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (316 aa)
           
  0.489
Solyc01g100330.2.1
Uncharacterized protein (202 aa)
           
  0.489
Solyc11g010110.1.1
Uncharacterized protein (878 aa)
           
  0.482
Solyc05g051520.2.1
Uncharacterized protein (823 aa)
           
  0.482
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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