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STRINGSTRING
Solyc03g115400.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g115400.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g115400.1.1annotation not available (137 aa)    
Predicted Functional Partners:
Solyc07g007210.2.1
annotation not available (925 aa)
     
 
  0.946
101255621
Hydroxyproline-rich glycoprotein family protein (345 aa)
     
 
  0.937
101260632
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (436 aa)
     
 
  0.937
101258325
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (570 aa)
     
 
  0.937
Solyc02g082110.2.1
annotation not available (181 aa)
     
 
  0.937
Solyc03g033950.2.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cytosol, nucleus; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown f /.../n DUF2050, pre-mRNA-splicing factor (InterPro-IPR018609); Has 13303 Blast hits to 9618 proteins in 489 species- Archae - 8; Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other Eukaryotes - 2334 (source- NCBI BLink) (487 aa)
     
 
  0.934
Solyc12g040310.1.1
annotation not available (66 aa)
     
 
  0.933
Solyc03g044040.1.1
annotation not available (190 aa)
     
 
  0.933
Solyc03g044030.1.1
annotation not available (361 aa)
     
 
  0.933
101268140
annotation not available (916 aa)
     
 
  0.933
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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