• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
LOC543870 protein (Solanum lycopersicum) - STRING interaction network
"LOC543870" - SNF1-related protein kinase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC543870SNF1-related protein kinase (504 aa)    
Predicted Functional Partners:
101245800
Uncharacterized protein; Homolog of yeast sucrose nonfermenting 4 (483 aa)
     
 
  0.911
Solyc03g118070.2.1
annotation not available (466 aa)
     
 
  0.885
Solyc01g067590.2.1
annotation not available (482 aa)
     
 
  0.885
101265334
Protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (1080 aa)
     
 
0.806
Solyc12g062250.1.1
annotation not available (573 aa)
     
 
  0.796
ptpkis1
Protein tyrosine phosphatase (370 aa)
     
 
  0.796
101266501
annotation not available (372 aa)
     
 
  0.796
DIG3
Protein phosphatase 2C (282 aa)
     
 
  0.672
SNF4
SNF4 (373 aa)
     
 
  0.630
101259584
annotation not available (112 aa)
           
  0.601
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (11%) [HD]