STRINGSTRING
Solyc03g115720.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g115720.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g115720.2.1Uncharacterized protein; Zinc finger (C3HC4-type RING finger) family protein (439 aa)    
Predicted Functional Partners:
Solyc08g083120.2.1
Uncharacterized protein; Ubiquitin (128 aa)
       
      0.744
Solyc08g008590.2.1
annotation not available (136 aa)
       
      0.744
Solyc06g053210.2.1
annotation not available (188 aa)
       
      0.744
101264240
Ubiquitin (128 aa)
       
      0.744
Solyc01g096290.2.1
Ubiquitin (128 aa)
       
      0.744
TCP14
Uncharacterized protein; TCP transcription factor 14 (266 aa)
       
      0.706
TCP15
TCP transcription factor 15 (249 aa)
       
      0.706
TCP17
TCP transcription factor 17 (416 aa)
       
      0.649
TCP23
TCP transcription factor 23 (383 aa)
       
      0.649
TCP16
TCP transcription factor 16 (409 aa)
       
      0.649
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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