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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc03g116050.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g116050.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g116050.1.1annotation not available (517 aa)    
Predicted Functional Partners:
Solyc07g007210.2.1
annotation not available (925 aa)
     
 
  0.981
cdc5
CDC5-like protein (987 aa)
     
 
  0.972
Solyc10g081290.1.1
annotation not available (207 aa)
     
 
  0.949
Solyc10g081090.1.1
annotation not available (127 aa)
     
 
  0.949
Solyc10g081070.1.1
annotation not available (684 aa)
     
 
  0.949
Solyc07g041790.1.1
annotation not available (73 aa)
     
 
  0.949
101245685
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- mRNA splicing factor, Cwf21 (InterPro-IPR013170); Has 30201 Blast hits to 17322 proteins in 780 sp /.../ Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (639 aa)
     
 
  0.948
101245976
Uncharacterized protein; Family of unknown function (DUF572) (332 aa)
     
 
  0.939
101268712
annotation not available (686 aa)
     
 
  0.927
Solyc03g007610.2.1
annotation not available (715 aa)
     
 
  0.927
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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