STRINGSTRING
Solyc03g116340.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g116340.2.1" - DNA-binding protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g116340.2.1DNA-binding protein (241 aa)    
Predicted Functional Partners:
Solyc05g009150.2.1
Uncharacterized protein (1241 aa)
     
   
  0.509
Solyc03g119300.2.1
Uncharacterized protein (1236 aa)
     
   
  0.509
Solyc07g063040.2.1
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 (508 aa)
           
  0.489
Solyc10g079660.1.1
Uncharacterized protein (697 aa)
     
   
  0.463
Solyc10g079650.1.1
Uncharacterized protein (250 aa)
     
   
  0.463
Solyc10g076780.1.1
Uncharacterized protein (415 aa)
           
  0.454
Solyc09g014390.1.1
Uncharacterized protein (401 aa)
           
  0.454
Solyc02g078590.1.1
Uncharacterized protein (429 aa)
           
  0.454
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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