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Solyc03g116440.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g116440.1.1" - RING/FYVE/PHD zinc finger superfamily protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g116440.1.1RING/FYVE/PHD zinc finger superfamily protein (709 aa)    
Predicted Functional Partners:
Solyc04g049120.2.1
Uncharacterized protein; Duplicated homeodomain-like superfamily protein (1580 aa)
     
 
  0.895
101245846
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Histone deacetylation protein Rxt3 (InterPro-IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species- Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes /.../9 (source- NCBI BLink) (804 aa)
       
 
  0.799
101251648
annotation not available (430 aa)
       
 
  0.778
101254943
Histone deacetylase 1; Belongs to the histone deacetylase family. HD Type 1 subfamily (498 aa)
       
 
  0.778
101258377
annotation not available (471 aa)
       
 
  0.778
101256864
annotation not available (449 aa)
       
 
  0.778
Solyc01g096950.2.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (523 aa)
       
 
  0.721
Solyc10g045400.1.1
Uncharacterized protein; Histone acetyltransferase of the GNAT family 1 (404 aa)
     
 
  0.690
101268409
annotation not available (873 aa)
       
 
  0.669
101248257
SMAD/FHA domain-containing protein (832 aa)
       
 
  0.669
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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