• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc03g116900.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g116900.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g116900.2.1annotation not available (522 aa)    
Predicted Functional Partners:
cdc5
CDC5-like protein (987 aa)
       
      0.745
101263262
annotation not available (674 aa)
           
  0.739
101247715
annotation not available (301 aa)
       
      0.719
101267322
annotation not available (1302 aa)
   
 
  0.690
101255314
annotation not available (383 aa)
           
  0.684
101267456
annotation not available (377 aa)
           
  0.684
101257769
Cation efflux family protein (401 aa)
     
 
  0.674
101249509
Uncharacterized protein; Heavy metal atpase 1 (821 aa)
   
 
  0.635
Solyc09g005260.2.1
annotation not available (454 aa)
     
   
  0.605
101247486
Uncharacterized protein; Copper transporter 5 (149 aa)
           
  0.604
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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