STRINGSTRING
Solyc03g116920.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g116920.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g116920.1.1Uncharacterized protein (1165 aa)    
Predicted Functional Partners:
Solyc06g073780.2.1
SMC3 (1229 aa)
     
  0.977
Solyc11g008740.1.1
Uncharacterized protein (1278 aa)
     
  0.955
Solyc06g074870.1.1
Uncharacterized protein (402 aa)
     
  0.955
Solyc06g074860.1.1
Uncharacterized protein (171 aa)
     
  0.955
Solyc02g093930.2.1
Uncharacterized protein (700 aa)
     
  0.955
Solyc02g086540.1.1
Uncharacterized protein (476 aa)
     
  0.955
Solyc01g086690.2.1
Uncharacterized protein (668 aa)
     
  0.955
Solyc06g083870.2.1
SMC1 (1218 aa)
     
  0.953
Solyc05g026510.2.1
Uncharacterized protein (1155 aa)
     
  0.952
Solyc03g059420.2.1
Uncharacterized protein (1620 aa)
     
  0.902
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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