101244756 protein (Solanum lycopersicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

101244756

annotation not available (274 aa)

Predicted Functional Partners:

CNOT1

0.932

101245924

0.925

Solyc10g078950.1.1

0.852

101260665

0.852

Solyc03g059010.2.1

0.852

101258724

0.828

Solyc06g075590.2.1

0.828

101260340

0.828

101266237

0.709

101251630

0.705

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
101244756	101245924	Solyc03g117030.1.1	Solyc12g019860.1.1	annotation not available	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	0.925
101244756	101251630	Solyc03g117030.1.1	Solyc10g017530.2.1	annotation not available	annotation not available	0.705
101244756	101258724	Solyc03g117030.1.1	Solyc11g072940.1.1	annotation not available	annotation not available	0.828
101244756	101260340	Solyc03g117030.1.1	Solyc04g078910.2.1	annotation not available	Thioredoxin superfamily protein	0.828
101244756	101260665	Solyc03g117030.1.1	Solyc08g075010.2.1	annotation not available	annotation not available	0.852
101244756	101266237	Solyc03g117030.1.1	Solyc07g007890.2.1	annotation not available	Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein	0.709
101244756	CNOT1	Solyc03g117030.1.1	Solyc01g090780.2.1	annotation not available	Uncharacterized protein; Transcription regulators	0.932
101244756	Solyc03g059010.2.1	Solyc03g117030.1.1	Solyc03g059010.2.1	annotation not available	annotation not available	0.852
101244756	Solyc06g075590.2.1	Solyc03g117030.1.1	Solyc06g075590.2.1	annotation not available	annotation not available	0.828
101244756	Solyc10g078950.1.1	Solyc03g117030.1.1	Solyc10g078950.1.1	annotation not available	annotation not available	0.852
101245924	101244756	Solyc12g019860.1.1	Solyc03g117030.1.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	annotation not available	0.925
101245924	101251630	Solyc12g019860.1.1	Solyc10g017530.2.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	annotation not available	0.860
101245924	101258724	Solyc12g019860.1.1	Solyc11g072940.1.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	annotation not available	0.943
101245924	101260340	Solyc12g019860.1.1	Solyc04g078910.2.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	Thioredoxin superfamily protein	0.973
101245924	101260665	Solyc12g019860.1.1	Solyc08g075010.2.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	annotation not available	0.952
101245924	101266237	Solyc12g019860.1.1	Solyc07g007890.2.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein	0.719
101245924	CNOT1	Solyc12g019860.1.1	Solyc01g090780.2.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	Uncharacterized protein; Transcription regulators	0.994
101245924	Solyc03g059010.2.1	Solyc12g019860.1.1	Solyc03g059010.2.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	annotation not available	0.952
101245924	Solyc06g075590.2.1	Solyc12g019860.1.1	Solyc06g075590.2.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	annotation not available	0.943
101245924	Solyc10g078950.1.1	Solyc12g019860.1.1	Solyc10g078950.1.1	Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein	annotation not available	0.952

page 1 of 6

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2018

Credits

Access

Info

About