STRINGSTRING
Solyc03g117350.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g117350.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g117350.1.1Uncharacterized protein (472 aa)    
Predicted Functional Partners:
Solyc03g117420.2.1
Uncharacterized protein (606 aa)
     
   
  0.510
Solyc07g007340.2.1
Uncharacterized protein (559 aa)
           
  0.497
Solyc03g117300.2.1
Uncharacterized protein (563 aa)
           
  0.497
Solyc06g071110.2.1
Uncharacterized protein (337 aa)
         
  0.495
Solyc05g006820.2.1
Uncharacterized protein (311 aa)
         
  0.495
Solyc10g048180.1.1
Uncharacterized protein (427 aa)
     
 
  0.479
Solyc02g082520.1.1
Uncharacterized protein (419 aa)
     
 
  0.479
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
           
  0.461
Solyc09g014320.2.1
2’-O-ribose RNA methyltransferase TRM7 homolog ; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (316 aa)
           
  0.448
Solyc06g068310.1.1
Uncharacterized protein (193 aa)
           
  0.446
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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