STRINGSTRING
Solyc03g117430.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g117430.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g117430.2.1Uncharacterized protein (459 aa)    
Predicted Functional Partners:
Solyc05g009780.2.1
Uncharacterized protein (360 aa)
     
 
  0.906
Solyc02g090670.2.1
Uncharacterized protein (344 aa)
     
 
  0.901
Solyc01g091070.2.1
Uncharacterized protein (388 aa)
     
 
  0.895
Solyc01g006800.2.1
Peptidase M ; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (389 aa)
     
 
  0.624
Solyc06g082090.2.1
Uncharacterized protein (387 aa)
     
 
  0.623
Solyc06g007200.2.1
Uncharacterized protein (390 aa)
     
 
  0.623
Solyc07g064950.2.1
Uncharacterized protein (527 aa)
     
      0.618
Solyc01g081050.2.1
Uncharacterized protein (1206 aa)
       
      0.604
Solyc11g051050.1.1
Uncharacterized protein (62 aa)
         
  0.491
Solyc04g015750.2.1
Uncharacterized protein (1381 aa)
         
  0.491
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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