• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
101259928 protein (Solanum lycopersicum) - STRING interaction network
"101259928" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101259928annotation not available (595 aa)    
Predicted Functional Partners:
cdc5
CDC5-like protein (987 aa)
     
 
  0.880
DHX35
RNA helicase family protein (693 aa)
     
 
  0.846
101260947
U5 small nuclear ribonucleoprotein helicase (2088 aa)
     
 
  0.773
101260893
annotation not available (1705 aa)
     
 
  0.764
101247309
annotation not available (1730 aa)
     
 
  0.764
101249197
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3’-end formation (439 aa)
     
        0.676
Solyc11g071660.1.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF926 (InterPro-IPR00 /.../ Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (535 aa)
     
      0.616
101250549
annotation not available (1072 aa)
     
      0.589
101267090
DNA/RNA helicase protein (1071 aa)
     
   
  0.581
101243672
Helicase protein with RING/U-box domain (1122 aa)
     
   
  0.581
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (8%) [HD]