STRINGSTRING
Solyc03g117440.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g117440.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g117440.2.1Uncharacterized protein (595 aa)    
Predicted Functional Partners:
Solyc01g108600.2.1
Uncharacterized protein (1072 aa)
     
      0.793
Solyc09g098390.2.1
Uncharacterized protein (355 aa)
     
 
  0.609
Solyc02g085420.2.1
Uncharacterized protein (478 aa)
     
 
  0.609
Solyc08g082580.2.1
Uncharacterized protein (175 aa)
       
      0.604
Solyc02g061790.2.1
Uncharacterized protein (103 aa)
       
      0.604
Solyc11g071660.1.1
Uncharacterized protein (535 aa)
     
      0.571
Solyc09g097820.2.1
Uncharacterized protein (693 aa)
     
   
  0.534
Solyc06g069480.2.1
Uncharacterized protein (2088 aa)
     
 
  0.487
Solyc12g015790.1.1
Eukaryotic translation initiation factor 6 ; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (245 aa)
   
   
  0.471
Solyc12g010210.1.1
Eukaryotic translation initiation factor 6 ; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (243 aa)
   
   
  0.469
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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