STRINGSTRING
Solyc03g119290.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g119290.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g119290.2.1Uncharacterized protein (588 aa)    
Predicted Functional Partners:
Solyc08g007520.2.1
Uncharacterized protein (330 aa)
       
 
  0.957
Solyc10g083770.1.1
Uncharacterized protein (333 aa)
     
 
  0.956
PELOTA
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (378 aa)
     
 
  0.956
Solyc06g071460.2.1
Uncharacterized protein (238 aa)
       
 
  0.956
Solyc05g047420.2.1
Uncharacterized protein (443 aa)
     
 
  0.948
Solyc04g050480.2.1
Uncharacterized protein (200 aa)
       
 
  0.936
Solyc09g074090.2.1
Uncharacterized protein (325 aa)
       
 
  0.930
Solyc01g095480.2.1
Uncharacterized protein (243 aa)
       
 
  0.929
Solyc12g010520.1.1
Uncharacterized protein (405 aa)
     
  0.928
Solyc11g006660.1.1
Uncharacterized protein (437 aa)
     
  0.928
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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