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STRINGSTRING
Sdaqua protein (Solanum lycopersicum) - STRING interaction network
"Sdaqua" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SdaquaUncharacterized protein; MIP (1264 aa)    
Predicted Functional Partners:
101247202
Uncharacterized protein; tRNAse Z1 (301 aa)
         
  0.925
101261023
Uncharacterized protein; Eukaryotic initiation factor 3 gamma subunit family protein (446 aa)
     
   
  0.892
101255555
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (585 aa)
   
      0.873
101266117
DEA(D/H)-box RNA helicase family protein; Belongs to the DEAD box helicase family (744 aa)
   
      0.871
Solyc07g042380.2.1
ARM repeat superfamily protein (1248 aa)
     
   
  0.871
101250792
ARM repeat superfamily protein (1162 aa)
     
   
  0.871
101246325
Transducin family protein / WD-40 repeat family protein (871 aa)
     
        0.871
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1096 aa)
     
   
  0.869
101261410
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nop14-like protein (InterPr /.../07276); Has 69842 Blast hits to 35213 proteins in 1572 species- Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source- NCBI BLink) (940 aa)
     
        0.869
101254131
Transducin family protein / WD-40 repeat family protein (907 aa)
     
        0.869
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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