STRINGSTRING
Solyc03g120940.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g120940.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g120940.2.1Uncharacterized protein (304 aa)    
Predicted Functional Partners:
Solyc03g114140.2.1
Uncharacterized protein (1119 aa)
       
 
  0.718
RPE1
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
       
 
  0.642
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
       
 
  0.617
Solyc05g010300.2.1
Uncharacterized protein (319 aa)
       
 
  0.611
Solyc08g075940.2.1
DNA-directed RNA polymerase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1213 aa)
     
      0.591
RPD2
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1211 aa)
     
      0.591
RPD1
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1206 aa)
       
 
  0.508
Solyc10g045190.1.1
Uncharacterized protein (119 aa)
           
  0.481
Solyc06g051990.2.1
Uncharacterized protein (467 aa)
           
  0.461
Solyc03g083210.2.1
Uncharacterized protein (437 aa)
           
  0.461
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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