STRINGSTRING
LOC543910 protein (Solanum lycopersicum) - STRING interaction network
"LOC543910" - JERF3 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC543910JERF3 (386 aa)    
Predicted Functional Partners:
TCP24
TCP transcription factor 24 (387 aa)
           
  0.761
Solyc08g048370.2.1
Uncharacterized protein (326 aa)
           
  0.761
Solyc05g015520.2.1
Uncharacterized protein (466 aa)
           
  0.761
Solyc01g009070.2.1
GAMyb-like1 (537 aa)
           
  0.699
Solyc10g086250.1.1
MYB transcription factor AN2 (275 aa)
           
  0.693
Solyc03g082820.2.1
Uncharacterized protein (294 aa)
           
  0.483
Solyc10g084760.1.1
Uncharacterized protein (2043 aa)
           
  0.447
Solyc09g010830.2.1
Uncharacterized protein (1973 aa)
           
  0.447
Solyc10g009420.2.1
E3 ubiquitin-protein ligase ; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (316 aa)
       
 
  0.426
Solyc06g051980.2.1
E3 ubiquitin-protein ligase ; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (315 aa)
       
 
  0.426
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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