STRINGSTRING
Solyc03g123900.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g123900.2.1" - alpha-1,2-Mannosidase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g123900.2.1alpha-1,2-Mannosidase (579 aa)    
Predicted Functional Partners:
Solyc01g112240.2.1
Uncharacterized protein (446 aa)
     
  0.944
gluII
Alpha glucosidase II (921 aa)
     
 
  0.908
Solyc02g070520.2.1
alpha-1,2-Mannosidase (629 aa)
     
 
0.814
Solyc06g063260.2.1
alpha-1,2-Mannosidase (565 aa)
         
 
0.800
Solyc07g056010.2.1
Uncharacterized protein (736 aa)
     
    0.794
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
           
  0.493
Solyc02g087290.2.1
Alpha-mannosidase (1151 aa)
     
 
  0.404
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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