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STRINGSTRING
Solyc03g124000.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc03g124000.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc03g124000.1.1annotation not available (735 aa)    
Predicted Functional Partners:
cdc5
CDC5-like protein (987 aa)
     
      0.756
101265174
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (814 aa)
 
       
  0.755
101260236
annotation not available (243 aa)
     
   
  0.739
101253611
Uncharacterized protein; Mucin-related (314 aa)
           
  0.685
Solyc04g072840.2.1
annotation not available (469 aa)
           
  0.652
Solyc04g072830.2.1
annotation not available (919 aa)
 
       
  0.652
Solyc04g049770.2.1
annotation not available (423 aa)
     
 
  0.625
UPF2
annotation not available (769 aa)
     
 
  0.625
Solyc02g062620.2.1
CAP-binding protein 20 (257 aa)
     
 
  0.598
Solyc03g059420.2.1
Sister chromatid cohesion protein; PHD finger family protein (1620 aa)
     
      0.590
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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