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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
SlMMP1 protein (Solanum lycopersicum) - STRING interaction network
"SlMMP1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SlMMP1annotation not available (367 aa)    
Predicted Functional Partners:
Solyc07g005070.1.1
annotation not available (351 aa)
   
 
 
  0.554
P69B
P69B protein; Subtilisin-like protease (745 aa)
       
 
  0.540
LOC543715
Thymidine kinase (234 aa)
           
  0.539
Solyc11g012480.1.1
annotation not available (275 aa)
           
  0.539
AT1
annotation not available (452 aa)
           
  0.538
AT3
annotation not available (452 aa)
           
  0.485
AT2
annotation not available (440 aa)
           
  0.483
101256583
Uncharacterized protein; Carboxypeptidase D, putative (485 aa)
           
  0.470
Solyc05g050500.1.1
ATPase, F1 complex, OSCP/delta subunit protein (241 aa)
           
  0.441
HY5
Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light- induced genes (158 aa)
       
 
  0.425
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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