STRINGSTRING
Solyc04g005090.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g005090.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g005090.2.1Uncharacterized protein (280 aa)    
Predicted Functional Partners:
Solyc02g021000.2.1
Uncharacterized protein (183 aa)
   
   
  0.622
Solyc08g008270.2.1
Uncharacterized protein (178 aa)
   
        0.538
Solyc01g106090.2.1
Uncharacterized protein (287 aa)
   
        0.531
Solyc02g005210.2.1
Uncharacterized protein (258 aa)
     
   
  0.517
Solyc05g051770.2.1
Uncharacterized protein (246 aa)
   
          0.508
Solyc08g075100.2.1
Uncharacterized protein (356 aa)
   
          0.507
VKOR
Vitamin K epoxide reductase (373 aa)
   
          0.503
Solyc06g082950.2.1
Uncharacterized protein (220 aa)
   
          0.501
Solyc06g082940.2.1
Uncharacterized protein (220 aa)
   
          0.500
Solyc02g005200.2.1
Uncharacterized protein (365 aa)
   
          0.493
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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