STRINGSTRING
Solyc04g005150.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g005150.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g005150.2.1Uncharacterized protein (175 aa)    
Predicted Functional Partners:
Solyc09g011300.2.1
Uncharacterized protein (286 aa)
   
  0.943
Solyc04g005140.2.1
Uncharacterized protein (354 aa)
   
  0.943
Solyc03g063860.1.1
Uncharacterized protein (144 aa)
   
  0.943
Solyc02g067880.1.1
Uridine kinase (445 aa)
 
0.939
Solyc10g005880.2.1
Uridine kinase (422 aa)
 
0.938
Solyc07g065890.2.1
Uridine kinase (446 aa)
 
0.938
Solyc06g065580.2.1
Uridine kinase (483 aa)
 
0.937
Solyc05g007990.2.1
Uncharacterized protein (916 aa)
   
0.928
rbcL
Ribulose bisphosphate carboxylase large chain ; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (477 aa)
       
  0.640
Solyc09g008130.2.1
Phosphoglycerate kinase (683 aa)
   
   
  0.548
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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