STRINGSTRING
Trax protein (Solanum lycopersicum) - STRING interaction network
"Trax" - Translin-associated factor X in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TraxTranslin-associated factor X (196 aa)    
Predicted Functional Partners:
Solyc10g086210.1.1
Uncharacterized protein (293 aa)
     
0.992
Solyc02g022930.2.1
3-hydroxyisobutyrate dehydrogenase (344 aa)
           
  0.701
rpoA
DNA-directed RNA polymerase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (266 aa)
     
   
  0.698
mdh
Malate dehydrogenase (442 aa)
           
  0.698
XSP10
Xylem sap protein 10 kDa (125 aa)
           
  0.698
formin
Formin (955 aa)
           
  0.695
AGO10
Protein argonaute 10 (933 aa)
       
  0.530
Solyc11g069100.1.1
Uncharacterized protein (170 aa)
       
  0.530
Solyc10g054920.1.1
Uncharacterized protein (104 aa)
       
  0.530
Solyc09g082830.2.1
Uncharacterized protein (982 aa)
       
  0.530
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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